fix: upgrade py2neo from 3.1.2 to 2021.1.5 (#28480)

* fix: upgrade py2neo from 3.1.2 to 2021.1.5

The dump_to_neo4j management command has not been working
since the upgrade to python 3.8. The latest version of
python that py2neo 3.1.2 states support for is python 3.5,
so this isn't surprising.

The earliest non-prerelease version of py2neo that supports
python 3.8 is 2020.x (skipping the 4.x and 5.x series). Since
we're going as far as a 2020.x, we may as well upgrade all the
way to the newest series, 2021.x. This commit does that upgrade,
as well as a handful of minor code modifications in order
to handle breaking changes that have been made to the py2neo
API, and some unrelated pin bumps as the result of
'make upgrade'.

This will also require an upgrade of Coursegraph's Neo4j
version from 3.2.x to 3.5.x.

TNL-8386